Website stats for Shenwei - shenwei.me

Wei Shen

- http://shenwei.me/

Wei Shen, Mengyu Shen, Xia Zhao, Hongbin Zhu, yuhui Yang, Shuguang Lu, yinling Tan, Gang Li, Ming Li, Jing Wang, Fuquan Hu, Shuai Le

Wei Shen's Note

- http://blog.shenwei.me/

Well organized directory structures in Bioinformatics project make the analysis more scalable and reproducible, and are easy for parallelization.

About · Wei Shen's Note

- http://blog.shenwei.me/about/

Wei Shen is a PhD student major in Microbiology. Before this, he got the Master Degree in Bioinformatics. See his Biography.. Contact. Email: shenwei356(AT)gmail.com

csvtk - CSV/TSV Toolkit - Wei Shen

- https://bioinf.shenwei.me/csvtk/

SeqKit - Ultrafast FASTA/Q kit

- https://bioinf.shenwei.me/seqkit/

Note 1: See version information of the softwares.. Note 2: See usage for detailed options of seqkit.. Subcommands. 34 functional subcommands in total. Sequence and subsequence....

SeqKit - shenwei.me

- http://shenwei.me/publication/seqkit/

←A novel algorithm for detecting multiple covariance and clustering of biological sequences; Anti-obesity effect of capsaicin in mice fed with high-fat diet is associated with...

FOMmiR -- MicroRNA Prediction Using a Fixed-Order Markov ...

- http://app.shenwei.me/cgi-bin/FOMmiR.cgi

FOMmiR provides full-function recognition of mature miRNA directly from the candidate hairpins across species, using a fixed-order Markov model based on the secondary structural...

TaxonKit - NCBI Taxonomy Toolkit - Wei Shen

- https://bioinf.shenwei.me/taxonkit/

Usage - SeqKit - Ultrafast FASTA/Q kit - Wei Shen

- https://bioinf.shenwei.me/seqkit/usage/

Extra information $ seqkit stats *.f{a,q}.gz -a file format type num_seqs sum_len min_len avg_len max_len Q1 Q2 Q3 sum_gap N50 Q20(%) Q30(%) hairpin.fa.gz FASTA RNA 28,645...

http://blog.shenwei.me/map-is-not-the-fastest-in-go · GitHub

- https://gist.github.com/shenwei356/59d0666b46a56fe36eb7

Analytics cookies. We use analytics cookies to understand how you use our websites so we can make them better, e.g. they're used to gather information about the pages you visit...

Wei Shen (SHENWEI) - metacpan.org

- https://metacpan.org/author/SHENWEI

RNA-HairpinFigure-0.141212: Draw hairpin-like text figure from RNA sequence and its secondary structure in dot-bracket notation. 12 Dec 2014 01:02:21 GMT

User Wei Shen - Unix & Linux Stack Exchange

- https://unix.stackexchange.com/users/249172/wei-shen

shenwei.me. Member for 3 years. 1 profile view. Last seen Aug 23 at 7:16. Communities (3) Stack Overflow 110 110 7 7 bronze badges; Unix & Linux 11 11 2 2 bronze badges;...

User: shenwei356

- https://www.biostars.org/u/4664/?page=3

Reputation: 5,280 Status: Trusted Location: China Website: http://shenwei.me/ Twitter: shenwei356 Scholar ID: Google Scholar Page

How to download all the bacteria genomes from NCBI?

- https://www.biostars.org/p/468426/

Oct 21, 2020 · I have downloaded all bacteria refseq from NCBI website. I am interested only in gunzip format of...

Yan Li Lab

- https://yanlilab.github.io/

Introduction. Yan Li’s lab focuses on following fields: Diseases genomics; Bioinformatics; Infection and immunology

本地化nr数据库 - SR-C

- https://sr-c.github.io/2018/10/02/local-nr-database/

数据库下载 nr数据库下载前应确认其序列ID中包含有gi信息。推荐通过NCBI提供的脚本进行下载。 1 perl update_blastdb.pl nr 下载完成后解压 1 tar -zxvf *.tar.gz 建库 由于下载的

创建NR子库以及从NR库提取特定物种分类的序列 | 生信笔记

- https://www.bioinfo-scrounger.com/archives/207/

创建nr子库以及从nr库提取特定物种分类的序列

宏基因组之物种注释（基于nr库） - 简书

- https://www.jianshu.com/p/1d6edfcb4110

昨天下午捣鼓了一下宏基因组物种注释过程(基于nr库)，现在将整个流程记录一下。软件需求：blast，diamond，taxonkit(安装自行百度) 构建细菌子库 blast...

fasta/fq文件处理万能工具——Seqkit学习记录 - 简书

- https://www.jianshu.com/p/f0e65738b7c7

序列的搜索和定位(Searching：grep and locate) 1. grep 根据id名(可正则匹配)or特定的序列模式(motifs)来 搜索/提取序列。-n 根据序列全名来提取序列。-p -r 根据一定的正则匹配pattern来提取序列。-v反向提取序列，即去除匹配的序列。-f 根据id list来批量提取序列，很好用。-s -p...

seqkit——fastq/fasta快速处理_weixin_41869644的博客-CSDN博客

- https://blog.csdn.net/weixin_41869644/article/details/89493800

博主也是刚刚接触生信，会将自己平时练习用到的python脚本发布到博客上，用来记录自己的学习之路。 介绍 测序回来的fastq文件通常在分析之前，需要进行过滤，该脚本利用python实现从压缩的fastq文件中提取指定ID的序列，并保存为新的压缩格式的fastq文件。说明 输入文件为fq.gz文件，压缩的ID list ...

workLog: seqkit 安装与使用_lamovrevx的博客-CSDN博客

- https://blog.csdn.net/lamovrevx/article/details/106000159

目录 1、查看cpu的方法 2、查看内存使用 3、查看cpu和内存的使用率 4、查看硬盘大小 1、查看cpu的方法 cat /proc/cpuinfo 2、查看内存使用 free -m total：表示物理，内存总量 used：总计分配给缓存(包含Buffer和cache)使用的数量，但其中可能部分缓存并未实际使用 free：未被分配的内存。

ATF7-Dependent Epigenetic Changes Are Required for the ...

- https://www.cell.com/molecular-cell/fulltext/S1097-2765(20)30148-9

Yoshida et al. report that ATF7 is a key mediator of paternal low-protein diet (LPD)-induced intergenerational inheritance. In the testis, LPD induces ATF7 activation via ROS,...

Manual | PATHDET v1.0

- https://pathdet.hgc.jp/manual/

1. Data preparation. Prepare the FastQ file of the short reads of high throughput sequencer from the cell-free DNA. The compressed (gzipped) file is recommended.

RNA::HairpinFigure - Draw hairpin-like text figure from ...

- https://metacpan.org/pod/RNA::HairpinFigure

Dec 12, 2014 · As a valued partner and proud supporter of MetaCPAN, StickerYou is happy to offer a 10% discount on all Custom Stickers, Business Labels, Roll Labels, Vinyl...